plant science

Web Resources for Plant Scientists

by Christoph on October 16, 2009

miRU: Plant miRNA Potential Target Finder
http://bioinfo3.noble.org/miRNA/miRU.htm

This website allows users to predict plant miRNA target genes.  By entering a small RNA sequence (19-28nt) the program will report all potential complimentary sequences.

PlantGDB
http://www.plantgdb.org/

This website is dedicated entirely to plant miRNA and provides many useful tools such as sequence browser & assemblies, genome browser, and other tools and datasets.

PMRD:  plant miRNA Database
http://bioinformatics.cau.edu.cn/PMRD/

This site offers a complete list of all publicly known plant miRNA sequences.  The database is composed of a total of 8,433 sequences including all known sequences in the miRBase database.

UPC: A Resource for Predicting and Comparing Plant microRNAs
http://www3a.biotec.or.th/micropc/index.html

Here users can predict and compare plant miRNA sequences.  This site includes 128 miRNA families, 125 plant species, and 2,995 protein targets.

The UEA plant sRNA toolkit
http://srna-tools.cmp.uea.ac.uk/targets/

Users can input sequences up to 50 nucleotides in length in FASTA format to run target predictions for their sequence dataset.

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